ASCAT
nf-core/modules/ascat
Estimate allele-specific copy number from a tumour/normal BAM pair with ASCAT.
nf-core
模块
v1.0.0
结构
normal
normal_bai
tumor
tumor_bai
alleles
loci
gc
→
ASCAT
→
outdir
cnvs
输入
normal(file, 必填)
Normal BAM.
normal_bai(file, 必填)
Normal BAM index (.bai).
tumor(file, 必填)
Tumour BAM.
tumor_bai(file, 必填)
Tumour BAM index (.bai).
alleles(file, 必填)
G1000 SNP alleles reference.
loci(file, 必填)
G1000 SNP loci reference.
gc(file, 必填)
GC-content reference.