科研绘图
visualization · v1.0.3
用模板生成可直接发表的组学图表，配有专属绘图智能体。
智能体
Visualization
Specialist for template-guided scientific and omics figure design, template preview shortlists, and publication-ready visualization using the bundled omics-visualization skill.
技能
omics-visualization
Render, adapt, and audit publication-ready omics figures from result tables and matrices with bundled templates. Nature-style: claim, hierarchy, restraint, final-size readability. Choose, create, revise, or export scatter, heatmap, bar, distribution, line, network, flow, hierarchy, clustering dendrogram, pathway-ring, gene-structure, or ideogram for transcriptomics, proteomics, metabolomics, enrichment, survival, network, or related omics. Trigger: 组学绘图、科研配图、论文图表、聚类树、通路环图、应力布局,SVG散点,图标柱状图,多通路富集热图,通路分组富集热图,富集点图,GO点图,表达热图,免疫相关热图,关联点阵,平行集合图,泰森多边形,条形甜甜圈,环状比例图,免疫棒棒糖,环形棒棒糖,基因结构,核型图,感兴趣基因,火山图放大,UpSet,韦恩图,Venn,饱和突变热图,ΔΔG热图,oncoprint,突变瀑布图,基因组变异热图,分块聚类热图,NMF相关热图,环状热图,相关气泡热图,对角线分割热图,环形UMAP,UMAP环图,三元图,三元相图,相关散点矩阵,ggpairs,pairs plot,泳道图,游泳图,脊线图,山脊图,joyplot,RidgePlot,基因组覆盖度,coverage track,locus browser,HiChIP,突变棒棒糖,蛋白棒棒糖,g3viz,MutationMapper,蒲公英图,dandelion,Circos,基因组环图,共线性,synteny,弦图,chord diagram,基因组热图,嵌套缩放,nested circos. Not for upstream analysis, business dashboards, AI-generated illustrations, or template libraries.
脚本工具
viz_examples
Find real preview.png images already shipped with omics-visualization templates. Use when the user asks to see examples or styles without providing a data table. This reads the installed catalog and images; it does not create sample data, simulate a plot, render a new figure, or write to the project. Embed the returned preview_markdown images unchanged and explain that they are template examples, not plots of the user's data.
审批: 只读 · 所属技能: omics-visualizationviz_route
For new figure selection, profile a result table and shortlist bundled omics templates that fit its purpose. Returns columns and up to six candidates with template_id, fit, risks, and preview_markdown. Use it before choosing a new template; never invent template ids. Do not call it for a small revision of an existing prepared script. To show previews, embed each candidate's preview_markdown and stop for the user's choice. Data and scripts must be inside the project; copy external data in first.
审批: 只读 · 所属技能: omics-visualizationviz_prepare
For a newly selected template, copy its plot.R into the project and return the input contract and editable CONFIG/DATA PREPARATION sections. Edit the copy, then call viz_render. For a revision of an existing prepared plot.R, read and edit that project copy directly; do not copy or reset the bundled template. An existing copy is kept with its edits unless reset is true. Data and scripts must be inside the project; copy external data in first.
审批: 写入 · 所属技能: omics-visualizationviz_render
Run a prepared plot.R on the input table(s) and write the figure, then check the file. The script, the inputs, and the output must be inside the project; copy external data in first. Returns the output path, format, size in pixels, and the QA result (failed check names). A missing R package or an R error comes back as a short message; do not install packages. A passing QA only means the file is sound: still look at the figure at final size for clipped labels, legends and misleading encodings.
审批: 写入 · 所属技能: omics-visualization环境
内置环境 · phi-r
phi:r@1
R Notebook、scanpy R 互操作和内置组学绘图共用的 R 4.4 环境。
channels: conda-forge, bioconda使用技能: omics-visualization · 使用智能体: Visualization依赖包
来源: resources/runtime/environments/phi-r/environment.yml